-silent activates silent mode; suppressing all progress, logging and error
messages that would otherwise be displayed on the terminal.
-silent:logfile suppresses display to the terminal but with logging and error messages saved to the specified log file.
Maly2tiff generates TIFF output that snaps to 8 pixel alignment with the first pixel being the top left corner of the full mask (not the left pixel of the specified window).
The width and height of MALY Tiff output therefore might not be exactly the same as the user specified -width and -height. The MALY TIFF Output also might not be the same as the output from Mbs2tiff even if all the execution parameters are identical.
Added command line option -oasdir:directory to specify the directory the program shall find all of OASIS files instead of using the MALY file's ROOT record directory plus OASIS path/filename. e.g.
Example
1. Assuming the MALY file contains:
ROOT OASIS.MASK /tmp/maskSREF set1/test.oas
The program will look for this OASIS file in /tmp/mask/set1/test.oas
2. However, if the argument -oasdir:/user/oas is used:
The the MALY3TIFF program will look for the OASIS file in /user/oas/test.oas
Added -width: and -height: command line options to specify the Tiff
output width or height pixels. If only one of -width: or -height: is
specified, the specified dimension will be fitted approximately to the
specified number of pixels. If both -width: and -height: are specified,
then the side with the higher DPI would be used. The window area
aspect ratio is maintained.
e.g. With -width:1000 -height:500 -win:0,0,100,100
you won't get a 1000 x 500 Tiff output, you will get a 1008 x 1008
output instead (because of aspect ratio and snapping).
Similarly, -dpi: can be used to specify the DPI. The Tiff output in
pixels will then be calculated according to the window area size.
All Tiff pixels are snapped to 8 pixel alignment according to the full
mask size as specified in the Maly file.
Default Tiff output is approximately 1000 x 1000 pixels.
Now -dpi: is not a mandatory command line control anymore.
If -dpi: is not specified, the default Tiff size of 1000 x 1000 pixels is used.
Added 3 new command line options, -masks: -cmaskon -cmaskoff, to control
which masks to draw.
Specify -cmaskon to draw the structure groups in the cmask.
Specify -cmaskoff to not draw the structure groups in the cmask.
By default, the cmask structure groups are drawn.
The parameters in cmask are always used even with -cmaskoff.
Use -masks:name1,name2 to specify the masks to be drawn. The names of
the masks are separated by comma. Use -masks: with no names to turn
off all masks.
If a mask (Cmask or Mask) has no title section, the mask is not drawn
according to the spec. But Maly2tiff does not follow this rule. Use
-cmaskon -cmaskoff -masks: to control whether a mask is drawn or not.
By default, the cmask and all masks are drawn.
In the previous version, if no data exists in the window area, no Tiff output is generated. Now it generates a blank Tiff output.
Tiff Output DPIThe DPI info in the Tiff output is always 72 in the previous version. And there is a warning that the DPI is set to 72 when running the program. Both of these are now fixed, the specified DPI is now correctly embedded in the Tiff output and there's no warning message regarding a missing DPI being set to 72.
ROOT NEO and EB SupportAccording to RAVE's customer, the ROOT record can have the keyword
NEO and EB. These 2 keywords are now supported just like the keyword
OASIS.MALY in the spec.
According to RAVE's customer:
"These commands indicate that the job is compliant with the OASIS.NEO
and OASIS.EB standards that are enhancements to the OASIS.MALY format
agreed to by DNP, HITACHI, JEOL, and NUFLARE as a unified mask data
format."
RAVE does not need Maly title strings and thus they remain unsupported.
This is the first release of maly2tiff on Linux.